Merging updates from devel to master (Version 1.6.3) #369
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Merging build fixes into devel
… a PPI or motif are provided
Modified the LIONESS R code to disallow PANDA inference unless either a PPI or motif are provided
* update maintainer * update maintainer
* update sambar * update OTTER * Update main.yml * Update main.yml
* update sambar * update maintainer
* 1.6.2 (netZoo#339) * Modified the LIONESS R code to disallow PANDA inference unless either a PPI or motif are provided * add mode parameter to lioness (netZoo#336) * update maintainer * update maintainer * update maintainer * update maintainer (netZoo#337) * update maintainer * update maintainer * Update ALPACA.R * update sambar (netZoo#338) --------- Co-authored-by: Tara Eicher <taraeicher@yahoo.com> * Changing 'monsterCalculateTmPValues' to follow the same strategy as the plot. From '1' to '2', (rows and columns). Fixing Issue netZoo#335. * Update main.yml * Update main.yml * Update main.yml * Update README.md * Update main.yml * temporarily deactivating test * checking that non-parametric works similar to zscore pvalue in monster * fixing monster pvalue * reconciling monster pvalues * reconciling pvalues * fixing testing and adding cases * fixing testing * adding test file * adding test file * moving data * fixing test * Delete data/monsterPvals.RData * Update test-monster.R --------- Co-authored-by: Marouen <marouenbg@users.noreply.github.com> Co-authored-by: Tara Eicher <taraeicher@yahoo.com> Co-authored-by: violafanfani <viol.fanfani@gmail.com>
1. Add test for domonster that does simple check on simulated grn 2. Expand documentation on MONSTER to explain the regNet mode 3. Add simple check to MONSTER such that it will automatically toggle to regNet mode if motif is set to NA
Added code to handle single networks and corresponding tests
Syncing devel with master
updates to MONSTER docs + domonster test
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Syncing master and devel branches |
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Includes the following updates:
LIONESS
ALPACA and SAMBAR
BLOBFISH
OTTER
MONSTER