jonotuke · jonotuke · Apr 28, 2025 · Apr 22, 2025 · Apr 28, 2025
diff --git a/README.Rmd b/README.Rmd
@@ -17,6 +17,8 @@ knitr::opts_chunk$set(
 
 <!-- badges: start -->
 [![R-CMD-check](https://github.com/jonotuke/BREADR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/jonotuke/BREADR/actions/workflows/R-CMD-check.yaml)
+
+[![DOI](https://joss.theoj.org/papers/10.21105/joss.07916/status.svg)](https://doi.org/10.21105/joss.07916)
 <!-- badges: end -->
 
 The goal of BREADR is to provide an easy-to-use method for estimating degrees of relatedness (up to the second degree) for extremely low-coverage data. BREADR also allows users to quantify and visualise the level of confidence in the estimated degrees of relatedness. 

diff --git a/README.md b/README.md
@@ -6,6 +6,8 @@
 <!-- badges: start -->
 
 [![R-CMD-check](https://github.com/jonotuke/BREADR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/jonotuke/BREADR/actions/workflows/R-CMD-check.yaml)
+
+[![DOI](https://joss.theoj.org/papers/10.21105/joss.07916/status.svg)](https://doi.org/10.21105/joss.07916)
 <!-- badges: end -->
 
 The goal of BREADR is to provide an easy-to-use method for estimating

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -1,9 +1,9 @@
-pandoc: '3.4'
+pandoc: 3.6.4
 pkgdown: 2.1.1
 pkgdown_sha: ~
 articles:
   example-pipeline: example-pipeline.html
-last_built: 2025-04-14T10:49Z
+last_built: 2025-04-28T09:51Z
 urls:
   reference: https://jonotuke.github.io/BREADR/reference
   article: https://jonotuke.github.io/BREADR/articles
diff --git a/docs/reference/callRelatedness.html b/docs/reference/callRelatedness.html
diff --git a/docs/reference/counts_example.html b/docs/reference/counts_example.html
diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/docs/reference/pipe.html b/docs/reference/pipe.html
diff --git a/docs/reference/plotLOAF.html b/docs/reference/plotLOAF.html
diff --git a/docs/reference/plotSLICE.html b/docs/reference/plotSLICE.html
diff --git a/docs/reference/processEigenstrat.html b/docs/reference/processEigenstrat.html
diff --git a/docs/reference/read_ind.html b/docs/reference/read_ind.html
diff --git a/docs/reference/read_snp.html b/docs/reference/read_snp.html
diff --git a/docs/reference/relatedness_example.html b/docs/reference/relatedness_example.html
diff --git a/docs/reference/saveSLICES.html b/docs/reference/saveSLICES.html
diff --git a/docs/reference/split_line.html b/docs/reference/split_line.html
diff --git a/docs/reference/test_degree.html b/docs/reference/test_degree.html
diff --git a/docs/search.json b/docs/search.json