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  1. C.albicans-ml-pipeline C.albicans-ml-pipeline Public

    Pipeline of building a machine learning model to identify C. albicans gene essentiality

    Python 5

  2. BridGE-Python BridGE-Python Public

    BridGE: a pathway-based analysis tool for detecting genetic interactions from GWAS

    Python 5 1

  3. SGA_Public SGA_Public Public

    Compute genetic interactions from SGA output of colony sizes in yeast.

    MATLAB 4

  4. barseq_counter barseq_counter Public

    A simple tool for demultiplexing barcode sequencing experiments.

    Python 2 1

  5. BEAN-counter BEAN-counter Public

    Python 1 2

  6. CG-TARGET CG-TARGET Public

    R 1 5

Repositories

Showing 10 of 24 repositories
  • GIN Public
    csbio/GIN’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Nov 22, 2025
  • orobas Public
    csbio/orobas’s past year of commit activity
    R 0 MIT 0 0 0 Updated Nov 11, 2025
  • DeepSLP Public

    Leveraging cancer dependency data to predict synthetic lethality in human cells

    csbio/DeepSLP’s past year of commit activity
    0 MIT 0 0 0 Updated Jul 18, 2025
  • Calbicans_invivo_pipeline Public Forked from Karashan/Calbicans_invivo_pipeline

    C. albicans in vivo scoring pipeline

    csbio/Calbicans_invivo_pipeline’s past year of commit activity
    Python 0 1 0 0 Updated Jul 5, 2025
  • C.albicans_in_vitro_pipeline Public

    Functional genomic analysis of genes important for Candida albicans fitness in diverse environmental conditions

    csbio/C.albicans_in_vitro_pipeline’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 22, 2024
  • C.albicansDataHub Public Forked from peterwang0209/C.albicansDataHub
    csbio/C.albicansDataHub’s past year of commit activity
    Mathematica 0 1 0 0 Updated Jun 23, 2024
  • BridGE-Python Public

    BridGE: a pathway-based analysis tool for detecting genetic interactions from GWAS

    csbio/BridGE-Python’s past year of commit activity
    Python 5 1 0 0 Updated Jun 24, 2023
  • CSBIO-Website Public Forked from MeeshCompBio/CSBIO-Website
    csbio/CSBIO-Website’s past year of commit activity
    HTML 1 1 0 0 Updated Aug 24, 2022
  • BEAN-counter Public
    csbio/BEAN-counter’s past year of commit activity
    Python 1 2 3 0 Updated Aug 11, 2022
  • ae-norm Public

    Autoencoder normalization of the DepMap

    csbio/ae-norm’s past year of commit activity
    R 1 0 0 0 Updated May 11, 2022
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