Bio2BEL CTD

Enrich BEL graphs with the impact of chemical perturbagens on biological entities and systems.

Installation

bio2bel_ctd can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_ctd

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/ctd.git@master

Setup

The CTD can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import bio2bel_ctd
>>> ctd_manager = bio2bel_ctd.Manager()
>>> ctd_manager.populate()

Command Line Utility

bio2bel_ctd populate

Acknowledgements

This package heavily relies on Christian Ebeling's PyCTD.