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@RSC-RP

Research Scientific Computing

We increase the impact of Seattle Children's biomedical research by making cutting-edge computational biology and supercomputing accessible

Research Scientific Computing

We increase the impact of Seattle Children’s Research Institute (SCRI) biomedical research by making cutting-edge computational biology and supercomputing accessible to Seattle Children’s Hospital (SCH)

Bioinformatics Collaboration and Consultation

The Research Scientific Computing Team takes great pleasure in offering our consultation and collaborative support to facilitate your research needs. Our team consists of distinguished computational biologists and data scientists who possess extensive expertise in various domains of biomedical research, including all major Next Generation Sequencing (NGS) methodologies, single-cell analytics, variant calling, proteomics, metabolomics, machine learning, and more. See below for details on specific areas.

General support

Along with the services described below, we stand ready to collaborate with you to take on any new technology or research challenges that may arise in your endeavors.

  • Single-cell RNA-seq Profiling and Analysis
  • Single-cell ATAC-seq or 10x Multiome Profiling and Analysis
  • RNA-seq Analysis
  • Epigenetic and Transcription factor profiling
  • Whole genome and whole exome sequencing analysis
  • Spatial Transcriptomic Analysis
  • Microbiome Analysis
  • Long-read sequencing analysis
  • Proteomic Analysis

Seattle Chilren's

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  1. rnaseq_count_nf rnaseq_count_nf Public

    Nextflow 3

  2. nextflow_scri_config nextflow_scri_config Public

    An SCRI nextflow profile for NF-Core

  3. nf-core_vetted_pipelines nf-core_vetted_pipelines Public

    Parameters, configuration, and instructions for using individual nf-core pipelines

    R

  4. rare-disease-wf rare-disease-wf Public

    Variant calling with DeepVariant/DeepTrio, and variant filtering in families

    Nextflow

  5. nextflow_template nextflow_template Public

    Config for running non-nf-core Nextflow pipelines on Sasquatch

Repositories

Showing 10 of 20 repositories
  • nf-core_vetted_pipelines Public

    Parameters, configuration, and instructions for using individual nf-core pipelines

    RSC-RP/nf-core_vetted_pipelines’s past year of commit activity
    R 0 Artistic-2.0 0 0 0 Updated Dec 16, 2025
  • RSC-RP/rnaseq_count_nf’s past year of commit activity
    Nextflow 0 GPL-3.0 3 0 0 Updated Oct 22, 2025
  • nextflow_template Public

    Config for running non-nf-core Nextflow pipelines on Sasquatch

    RSC-RP/nextflow_template’s past year of commit activity
    0 Artistic-2.0 0 0 0 Updated Oct 22, 2025
  • rare-disease-wf Public

    Variant calling with DeepVariant/DeepTrio, and variant filtering in families

    RSC-RP/rare-disease-wf’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Oct 22, 2025
  • nextflow_scri_config Public

    An SCRI nextflow profile for NF-Core

    RSC-RP/nextflow_scri_config’s past year of commit activity
    0 MIT 0 1 0 Updated Oct 22, 2025
  • 2025-05_grundner_gwas_Mtub Public

    Association analysis in Mycobacterium tuberculosis

    RSC-RP/2025-05_grundner_gwas_Mtub’s past year of commit activity
    R 0 Artistic-2.0 0 0 0 Updated Sep 26, 2025
  • 2024-12_grundner_genotyping_Mtub Public

    Genotype calling in 17k Mycobacterium tuberculosis strains

    RSC-RP/2024-12_grundner_genotyping_Mtub’s past year of commit activity
    Nextflow 0 Artistic-2.0 0 0 0 Updated Sep 26, 2025
  • parers Public
    RSC-RP/parers’s past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated May 29, 2025
  • RFantibody Public Forked from hegelab/RFantibody

    Copy of RFantibody for use on Sasquatch

    RSC-RP/RFantibody’s past year of commit activity
    Python 0 MIT 134 0 0 Updated May 27, 2025
  • kappe_s_2022.04_PF_LiverStage Public

    Transcriptome Profiling of bulk RNA-seq from Hepatocytes infected with Plasmodium falciparum.

    RSC-RP/kappe_s_2022.04_PF_LiverStage’s past year of commit activity
    Shell 0 Artistic-2.0 1 0 0 Updated Sep 11, 2024

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