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@HenriquesLab

AI-driven Optical Biology Laboratory

Ricardo Henriques' research laboratory

Popular repositories Loading

  1. ZeroCostDL4Mic ZeroCostDL4Mic Public

    ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

    Jupyter Notebook 625 141

  2. NanoPyx NanoPyx Public

    Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging

    Jupyter Notebook 89 12

  3. DL4MicEverywhere DL4MicEverywhere Public

    Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images

    Jupyter Notebook 84 16

  4. NanoJ-Fluidics NanoJ-Fluidics Public

    Manual, source-code and binaries for the NanoJ-Fluidics project

    Java 52 8

  5. DeepBacs DeepBacs Public

    Python 31 6

  6. NanoJ-SRRF NanoJ-SRRF Public

    Super-resolution radial fluctuations (SRRF)

    Java 28 3

Repositories

Showing 10 of 49 repositories
  • VLab4Mic Public
    HenriquesLab/VLab4Mic’s past year of commit activity
    Python 0 MIT 0 7 1 Updated Jan 30, 2026
  • rxiv-maker Public

    Rxiv-Maker is a GitHub-native framework that converts markdown into a publication-ready PDF. It automates scientific preprint generation with a focus on reproducibility and version control

    HenriquesLab/rxiv-maker’s past year of commit activity
    Python 25 MIT 5 2 (1 issue needs help) 4 Updated Jan 30, 2026
  • folder2md4llms Public

    Combine files in a folder structure into a single text file suitable for use by LLMs, inspired by gpt-repository-loader

    HenriquesLab/folder2md4llms’s past year of commit activity
    Python 7 MIT 1 0 0 Updated Jan 30, 2026
  • homebrew-formulas Public

    Homebrew formulas for Henriques Lab tools

    HenriquesLab/homebrew-formulas’s past year of commit activity
    Just 0 0 0 0 Updated Jan 30, 2026
  • TaskRepo Public
    HenriquesLab/TaskRepo’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 30, 2026
  • EZInput Public

    EZInput is a Python library that simplifies the creation of graphical user interfaces (GUIs) both in the terminal and in Jupyter notebooks. It provides a convenient way to add various types of widgets, making it easier to interact with your code and visualize results.

    HenriquesLab/EZInput’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Jan 30, 2026
  • vscode-rxiv-maker Public

    A vscode plugin for rxiv-maker

    HenriquesLab/vscode-rxiv-maker’s past year of commit activity
    TypeScript 4 MIT 0 0 6 Updated Jan 23, 2026
  • vlab4mic-jupyter Public
    HenriquesLab/vlab4mic-jupyter’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 23, 2026
  • NanoPyx Public

    Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging

    HenriquesLab/NanoPyx’s past year of commit activity
    Jupyter Notebook 89 CC-BY-4.0 12 1 2 Updated Jan 17, 2026
  • manuscript-rxiv-maker Public

    Rxiv-Maker preprint source code

    HenriquesLab/manuscript-rxiv-maker’s past year of commit activity
    Python 2 0 0 0 Updated Dec 24, 2025
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