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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 27 19

  2. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 23 8

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 15 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 13 3

  5. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 10 4

  6. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 10 3

Repositories

Showing 10 of 554 repositories
  • aind-analysis-job-dispatch Public

    Capsule to create the input job model for analysis wrapper

    AllenNeuralDynamics/aind-analysis-job-dispatch’s past year of commit activity
    Python 0 MIT 0 5 0 Updated Jan 27, 2026
  • AllenNeuralDynamics/HSFPpreprocess’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 27, 2026
  • AutoTomeQC Public

    Automates sectioning quality control for the Prototome/Pylasso. Analyzes block face images to grade cuts (Go/No-Go/Unsure) based on knife marks, splits, thickness, etc.

    AllenNeuralDynamics/AutoTomeQC’s past year of commit activity
    Python 0 MIT 0 5 0 Updated Jan 27, 2026
  • aind-dft-ephys-analysis Public

    shared library for dynamic foraging task (DFT) - neuropixels analysis

    AllenNeuralDynamics/aind-dft-ephys-analysis’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 27, 2026
  • AllenNeuralDynamics/aind-ophys-oasis-event-detection’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 27, 2026
  • brainwasher Public

    0354: control software for automated tissue clearing system

    AllenNeuralDynamics/brainwasher’s past year of commit activity
    Python 0 MIT 1 16 2 Updated Jan 27, 2026
  • AllenNeuralDynamics.HamamatsuCamera Public

    A bonsai package to interface with Hamamatsu cameras

    AllenNeuralDynamics/AllenNeuralDynamics.HamamatsuCamera’s past year of commit activity
    C# 1 MIT 0 8 0 Updated Jan 27, 2026
  • AllenNeuralDynamics/brainslosher-web-ui’s past year of commit activity
    TypeScript 0 0 1 5 Updated Jan 27, 2026
  • Aind.Behavior.VrForaging Public

    Task implemention of VR Foraging experiment

    AllenNeuralDynamics/Aind.Behavior.VrForaging’s past year of commit activity
    C# 3 MIT 0 18 1 Updated Jan 27, 2026
  • aind-data-transfer-service Public

    FastAPI service to run data compression and transfer jobs on the hpc

    AllenNeuralDynamics/aind-data-transfer-service’s past year of commit activity
    Python 3 MIT 0 3 1 Updated Jan 27, 2026

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