From e7805b7c0b4fcdb58e79c8199456ecf820047dcc Mon Sep 17 00:00:00 2001 From: Dinindu Senanayake Date: Thu, 16 Oct 2025 11:42:15 +0100 Subject: [PATCH 1/2] downgrading Python to 3.10.8 due to cgat_core compatibilty issues with py3.11 https://github.com/cgat-developers/cgat-core/pull/203 --- shared/modules/foss-2023a_GCCcore-12.3.0/modules.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/shared/modules/foss-2023a_GCCcore-12.3.0/modules.sh b/shared/modules/foss-2023a_GCCcore-12.3.0/modules.sh index 9af27ce..6a3fddd 100644 --- a/shared/modules/foss-2023a_GCCcore-12.3.0/modules.sh +++ b/shared/modules/foss-2023a_GCCcore-12.3.0/modules.sh @@ -40,7 +40,7 @@ module use -a /apps/eb/dev/${ARCH}/modules/all # load a core set of modules ## Programming languages -mods="Python/3.11.3-GCCcore-12.3.0" +mods="Python/3.10.8-GCCcore-12.3.0" mods=$mods" Java/11.0.20" mods=$mods" Perl/5.36.1-GCCcore-12.3.0" mods=$mods" nodejs/18.17.1-GCCcore-12.3.0" # dependency for R. From 848bd0e737a86e27610742456d9b0455291d09c4 Mon Sep 17 00:00:00 2001 From: Dinindu Senanayake Date: Tue, 27 Jan 2026 11:30:49 +0000 Subject: [PATCH 2/2] remove Slurm config path as it is configless as of 27.01.2026 --- dotfiles/bashrc | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dotfiles/bashrc b/dotfiles/bashrc index ad9331e..e165aac 100644 --- a/dotfiles/bashrc +++ b/dotfiles/bashrc @@ -29,7 +29,7 @@ if [[ -n "$PS1" ]]; then # } ## SLURM configuration - export SLURM_CONF=/run/slurm/conf/slurm.conf + # export SLURM_CONF=/run/slurm/conf/slurm.conf # Commenting out as Slurm is configless as of 27.01.2026 export DRMAA_LIBRARY_PATH=/usr/lib64/libdrmaa.so ## Alternative set up for UGE (comment out the two lines above)