diff --git a/README.md b/README.md new file mode 100644 index 0000000..4aed589 --- /dev/null +++ b/README.md @@ -0,0 +1,46 @@ +# Readme for the Models Associated with the Paper + +Greenstein JL et al., Role of the calcium-independent transient outward current Ito1 in shaping action potential morphology and duration. +*Circ Res* 2000;87:1026-1033. + +## Abstract + +The Kv4.3-encoded current I_Kv4.3 has been identified as the major component of the voltage-dependent Ca(2+)-independent transient outward current I_to1 in human and canine ventricular cells. Experimental evidence supports a correlation between I_to1 density and prominence of the phase 1 notch; however, the role of I_to1 in modulating action potential duration (APD) remains unclear. To help resolve this role, Markov state models of the human and canine Kv4.3- and Kv1.4-encoded currents at 35 degrees C are developed on the basis of experimental measurements. A model of canine I_to1 is formulated as the combination of these Kv4.3 and Kv1.4 currents and is incorporated into an existing canine ventricular myocyte model. Simulations demonstrate strong coupling between L-type Ca(2+) current and I_Kv4.3 and predict a bimodal relationship between I_Kv4.3 density and APD whereby perturbations in I_Kv4.3 density may produce either prolongation or shortening of APD, depending on baseline I_to1 current level. + +--- + +The state diagram for this model was shown in figure 1A of the paper. +Model parameters are available at [http://circres.ahajournals.org/cgi/data/87/11/1026/DC1/1](http://circres.ahajournals.org/cgi/data/87/11/1026/DC1/1) + +For the sake of clarity, current traces were displaced in figure 2A. +Current-voltage relation of this current can also be constructed. + +## How to Run the Models + +**XPP:** start with the command + +``` +xpp ode\hKv4x.ode +``` + +Mouse click on **Initialconds**, and then (G)o. + +Regarding xpp program, please contact Bard Ermentrout's website [http://www.pitt.edu/~phase/](http://www.pitt.edu/~phase/) which describes how to get and use xpp. + +To run a series of voltage-clamp studies, click **Range over**, change to 'vtest_1', and then select voltage protocol from Steps (14), Start (-70) and End (+60). +This makes traces similar to fig 3A of the paper. + + + +## Contact + +The model files were submitted by: + +Dr. Sheng-Nan Wu, Dr. Ruey J. Sung, Ya-Jean Wang and Jiun-Shian Wu +National Cheng Kung University Medical College +Tainan 70101, Taiwan +e-mail: snwu@mail.ncku.edu.tw + +--- + +2025-05-27 – Standardized to Markdown \ No newline at end of file diff --git a/readme.html b/readme.html deleted file mode 100644 index 056d0bb..0000000 --- a/readme.html +++ /dev/null @@ -1,59 +0,0 @@ -
-This is the readme.txt for the models associated with the paper. - -Greenstein JL et al., Role of the calcium-independent transient outward -current Ito1 in shaping action potential morphology and duration. -Circ Res 2000;87:1026-1033. - -Abstract: -The Kv4.3-encoded current I_Kv4.3 has been identified as the major -component of the voltage-dependent Ca(2+)-independent transient -outward current I_to1 in human and canine ventricular -cells. Experimental evidence supports a correlation between I_to1 -density and prominence of the phase 1 notch; however, the role of -I_to1 in modulating action potential duration (APD) remains -unclear. To help resolve this role, Markov state models of the human -and canine Kv4.3- and Kv1.4-encoded currents at 35 degrees C are -developed on the basis of experimental measurements. A model of canine -I_to1 is formulated as the combination of these Kv4.3 and Kv1.4 -currents and is incorporated into an existing canine ventricular -myocyte model. Simulations demonstrate strong coupling between L-type -Ca(2+) current and I_Kv4.3 and predict a bimodal relationship -between I_Kv4.3 density and APD whereby perturbations in I_Kv4.3 -density may produce either prolongation or shortening of APD, -depending on baseline I_to1 current level. -------------------------------------- - -The state diagram for this model was shown in figure 1A of the paper. -Model parameters are available at. -http://circres.ahajournals.org/cgi/data/87/11/1026/DC1/1 -For the sake of clarity, current traces were displaced in figure 2A. -Current-voltage relation of this current can also be constructed. - -To run the models: -XPP: start with the command - -xpp ode\hKv4x.ode - -Mouse click on Initialconds, and then (G)o. - -Regarding xpp program, please contact with -Bard Ermentrout's website http://www.pitt.edu/~phase/ -describes how to get and use xpp. - -To run a series of voltage-clamp studies, click Range over, -change to 'vtest_1', -and then select voltage protocol from Steps (14), Start (-70) and End (+60). -This makes traces: - -- -similar to fig 3A of the paper. - -The model files were submitted by: - -Dr. Sheng-Nan Wu, Dr. Ruey J. Sung, Ya-Jean Wang and Jiun-Shian Wu -National Cheng Kung University Medical College -Tainan 70101, Taiwan -e-mail: snwu@mail.ncku.edu.tw -